Justworks vs QuickBooks Payroll Comparison: Reviews, Features, Pricing & Alternatives in 2026

Detailed side-by-side comparison to help you choose the right solution for your team

Updated Apr 2026 8 min read

Justworks

0.0 (0 reviews)

Justworks is an all-in-one PEO platform that simplifies payroll, benefits, HR, and compliance for small and medium-sized businesses to help you manage your team and grow your company with confidence.

Starting at $59/mo
Free Trial NO FREE TRIAL
VS

QuickBooks Payroll

0.0 (0 reviews)

QuickBooks Payroll is a comprehensive automated tax and compensation management software providing small to mid-sized businesses with integrated tools to pay employees, manage benefits, and file taxes accurately.

Starting at $45/mo
Free Trial 30 days

Quick Comparison

Feature Justworks QuickBooks Payroll
Website justworks.com quickbooks.intuit.com
Pricing Model Subscription Subscription
Starting Price $59/month $45/month
FREE Trial ✘ No free trial ✓ 30 days free trial
Free Plan ✘ No free plan ✘ No free plan
Product Demo ✓ Request demo here ✓ Request demo here
Deployment cloud mobile saas mobile
Integrations QuickBooks Xero Slack Greenhouse Lever Expensify Google Workspace QuickBooks Online TSheets SimplyInsured Guideline Mineral Amazon PayPal Shopify Square Expensify
Target Users small-business mid-market small-business mid-market
Target Industries
Customer Count 0 0
Founded Year 2012 1983
Headquarters New York, USA Mountain View, USA

Overview

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Justworks

Justworks is a Professional Employer Organization (PEO) platform designed to take the administrative burden off your shoulders. You can manage payroll, provide high-quality employee benefits, and handle complex compliance requirements all from a single, intuitive interface. By joining their PEO, you gain access to large-group insurance rates that are typically reserved for much larger corporations, helping you attract top talent while keeping costs manageable.

The platform is built specifically for small to mid-sized businesses across various industries that want to automate manual HR tasks. You can easily onboard new hires, track PTO, and sync your accounting software to keep your books accurate. It eliminates the stress of navigating state-specific tax filings and employment laws, allowing you to focus on scaling your business rather than managing paperwork.

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QuickBooks Payroll

QuickBooks Payroll is an automated solution designed to take the stress out of paying your team. Whether you have one employee or a growing workforce, you can run payroll in minutes with integrated time tracking and automatic tax calculations. The platform handles your federal and state tax filings and payments automatically, helping you stay compliant without manual data entry.

You can manage your entire back office by syncing payroll data directly with QuickBooks Online accounting. This integration ensures your financial books stay balanced and up-to-date every time you run a pay cycle. Beyond just paychecks, you can offer your team health benefits, 401(k) plans, and workers' comp, all managed from a single dashboard that scales with your business needs.

Overview

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Justworks Features

  • Automated Payroll Run payroll for salaried and hourly employees with automated tax filings and direct deposits in just a few clicks.
  • Benefits Access Provide your team with medical, dental, and vision plans from top carriers at competitive large-group rates.
  • Compliance Support Stay protected with automatic filings for W-2s, 1099s, and state-specific employment regulations without manual tracking.
  • Employee Onboarding Streamline the hiring process with digital document signing and automated account setup for every new team member.
  • Time Tracking Sync employee hours directly to payroll to ensure accurate payments and simplify overtime calculations for your staff.
  • HR Consulting Access certified HR experts who can guide you through complex workplace issues and policy creation whenever you need.
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QuickBooks Payroll Features

  • Auto Payroll. Set your payroll to run automatically each pay period so your team gets paid on time without you lifting a finger.
  • Automated Tax Filings. Let the software calculate, file, and pay your federal and state payroll taxes automatically to ensure year-round compliance.
  • Same-Day Direct Deposit. Keep your money longer and pay your employees faster with the ability to submit payroll on the very same day.
  • Integrated Time Tracking. Track employee hours and approve timesheets directly within the app to eliminate manual data entry and errors.
  • Health Benefits. Compare and choose medical, dental, and vision plans for your team with digital enrollment and automated deductions.
  • Workers' Comp Integration. Get quotes and manage your policies with a pay-as-you-go model that improves your business cash flow.
  • Expert Support. Access 24/7 premium support and even get a payroll setup review from a professional to ensure everything is correct.
  • HR Advisor Access. Consult with certified HR professionals to get custom handbooks and expert advice on complex hiring or termination issues.

Pricing Comparison

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Justworks Pricing

Basic
$59
  • Automated payroll and tax filings
  • HR information system (HRIS)
  • Compliance support and workers' comp
  • Employee onboarding and PTO tracking
  • Reporting and accounting integrations
Q

QuickBooks Payroll Pricing

Payroll Core
$45
  • Full-service automated payroll
  • Automated tax filings
  • Next-day direct deposit
  • Health health benefits
  • 401(k) plans
  • Expert product support

Pros & Cons

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Justworks

Pros

  • Extremely intuitive interface requires almost no user training
  • Access to high-quality health insurance at affordable rates
  • Responsive customer support with dedicated account managers
  • Seamless automation of complex state tax filings

Cons

  • Higher per-employee cost compared to non-PEO software
  • Limited customization for complex organizational structures
  • Requires switching your entire insurance carrier to theirs
A

QuickBooks Payroll

Pros

  • Seamless integration with QuickBooks Online accounting
  • User-friendly interface is easy for non-accountants
  • Reliable automated tax filing and payments
  • Fast same-day direct deposit options
  • Mobile app allows payroll runs from anywhere

Cons

  • Per-employee fees can become expensive
  • Customer support wait times can be long
  • Occasional glitches when syncing with third-party apps
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